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发表于 2005-8-21 11:28:08
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显示全部楼层
很多软件在debianscience分类里面，不一一列举了，相关专业的请自己去查找：
http://packages.debian.org/unstable/science/
achilles (2-4)
An artificial life and evolution simulator
arb (0.0.20050506-2) [non-free]
[Biology] Integrated package for data handling and analysis
arb-common (0.0.20050506-2) [non-free]
[Biology] Integrated package for data handling and analysis
arb-doc (0.0.20050506-2) [non-free]
[Biology] Integrated package for data handling and analysis
avida-base (2.0b7-3)
Auto-adaptive genetic system for Artificial Life research
avida-qt-viewer (2.0b7-3)
qt viewer for avida
avida-viewer (2.0b7-3)
ncurses viewer for avida
biococoa.app (1.6.0-1)
Sequence file format conversion for GNUstep
biomode (1.002-7)
[Biology] An Emacs mode to edit genetic data
bioperl (1.4-1)
Perl tools for computational molecular biology
blast2 (1:2.2.10.20050429-1 [m68k], 1:2.2.11.20050605-2 [alpha,amd64,arm,hppa,i386,ia64,mips,mipsel,powerpc,s390,sparc])
Basic Local Alignment Search Tool
boxshade (3.1.1-1)
[Biology] Pretty-printing of multiple sequence alignments
cassbeam (1.0-6)
A program for Cassegrain antenna modelling
celestia-common (1.3.2-2)
Datafiles for Celestia, a real-time visual space simulation
celestia-glut (1.3.2-2)
A real-time visual space simulation (GLUT frontend)
cernlib (2005.05.09-3)
almost complete set of Debian Cernlib packages
cernlib-core (2005.05.09-3)
Cernlib main libraries and programs
cernlib-core-dev (2005.05.09-3)
Cernlib development headers, tools, and static libraries
cernlib-extras (2005.05.09-3)
miscellaneous Cernlib programs unlikely to be used by many
cernlib-montecarlo (2005.05.09-3)
Cernlib Monte Carlo libraries
chemtool (1.6.6-1 [hurd-i386], 1.6.7-1 [hppa], 1.6.7-2 [alpha,amd64,arm,i386,ia64,m68k,mips,mipsel,powerpc,s390,sparc])
Chemical structures drawing program
clustalw (1.83-1) [non-free]
[Biology] Global multiple nucleotide or peptide sequence alignment
clustalw-mpi (0.13-2) [non-free]
[Biology] MPI-distributed global sequence alignment with ClustalW
clustalx (1.83-1) [non-free]
[Biology] GUI for clustalw
ctsim (4.3.2-1 [alpha,amd64,arm,hppa,ia64,m68k,mips,mipsel,powerpc,s390,sparc], 4.3.3-2 [i386])
Computed tomography simulator
ctsim-athlon (4.3.3-2)
Computed tomograpy simulator (Athlon optimized)
ctsim-help (4.3.3-2)
Online help file for CTSim
ctsim-pentium4 (4.3.3-2)
Computed tomograpy simulator (Pentium 4 optimized)
dcmtk (3.5.3-3 [m68k], 3.5.3-4 [alpha,amd64,arm,hppa,i386,ia64,mips,mipsel,powerpc,s390,sparc])
The OFFIS DICOM toolkit command line utilities
drawmap (2.5-1)
draws customized maps, using raw USGS data files
dx (1:4.3.2-5)
OpenDX (IBM Visualization Data Explorer) - main package
dxsamples (4.2.0-1)
Sample programs for the OpenDX Data Explorer
ent (1.0-5)
pseudorandom number sequence test program
fastdnaml (1.2.2-5)
[Biology] A tool for construction of phylogenetic trees of DNA sequences
fastlink (4.1P-fix91-1)
[Biology] A faster version of pedigree programs of Linkage
fastlink-doc (4.1P-fix91-1)
[Biology] Some papers about fastlink
felt (3.06-9)
Package for introductory level finite element analysis
fityk (0.5.0p1-1 [hurd-i386,ia64,m68k], 0.5.1-1 [alpha,amd64,arm,hppa,i386,mips,mipsel,powerpc,s390,sparc])
general-purpose nonlinear curve fitting and data analysis
fv (3.0-11)
a tool for viewing and editing FITS format files
g3data (1:1.4.0.1-1)
extract data from scanned graphs
garlic (1.4-1)
A visualization program for biomolecules
gdal-bin (1.2.6-1.2 [alpha,i386,ia64,mips,mipsel,powerpc,s390], 1.2.6-1 [amd64,arm,hppa,m68k,sparc])
Geospatial Data Abstraction Library - Utility programs
gdis (0.86-1)
molecular display
gdpc (2.2.4-1)
visualiser of molecular dynamic simulations
gdpc-examples (2.2.4-1)
example files for the gdpc program
geant321 (2005.05.09-3)
[Physics] Particle detector description and simulation tool
geant321-data (2005.05.09-3)
[Physics] Data for Geant 3.21 detector simulator
genesis (2.2.1-5)
general-purpose neural simulator
gff2aplot (2.0-3)
pair-wise alignment-plots for genomic sequences in PostScript
gff2ps (0.98d-1)
produces PostScript graphical output from GFF-files
gliese (1.1-12) [non-free]
Stellar data set from the Third Catalogue of Nearby Stars
gmt (3.4.4-1)
Generic Mapping Tools
gmt-tutorial-pdf (3.4-1.1)
Tutorial for the Generic Mapping Tools (PDF)
gperiodic (2.0.7-5 [alpha,amd64,arm,hppa,i386,ia64,m68k,mips,mipsel,powerpc,s390,sparc], 2.0.7-4 [hurd-i386])
periodic table application
gpib-modules-source (3.2.04-4)
kernel modules for various GPIB boards
gpx2shp (0.69-1)
convert GPS or GPX file to ESRI Shape file
grass (6.0.0-1)
Geographic Resources Analysis Support System
grass-doc (6.0.0-1)
Geographic Resources Analysis Support System documentation
gri (2.12.9-2)
a language for scientific illustration.
gri-el (2.12.9-2)
Emacs major-mode for gri, a language for scientific graphics.
h5utils (1.9.1-2)
HDF5 files visualization tools
hdf5-tools (1.6.4-2)
Hierarchical Data Format 5 (HDF5) - Runtime tools
hmmer (2.1.4)
models protein or nucleic acid sequences.
hodie (1.4-3)
prints the date in latin
ifrit (2.9.3-1)
a powerful tool for visualizing 3-dimensional data sets
kalzium (4:3.3.2-3)
chemistry teaching tool for KDE
kstars (4:3.3.2-3)
desktop planetarium for KDE
kstars-data (4:3.3.2-3)
data files for KStars desktop planetarium
kxterm (2005.05.09-1 [sparc], 2005.05.09-2 [hppa], 2004.11.04-3 [m68k], 2005.05.09-3 [alpha,amd64,arm,i386,ia64,mips,mipsel,powerpc,s390])
Cernlib's KUIP terminal emulator
leksbot (1.2-8)
An explanatory dictionary of botanic and biological terms
libarb (0.0.20050506-2) [non-free]
[Biology] Integrated package for data handling and analysis
libbio-ruby (0.6.2-2)
bioruby tools for computational molecular biology
libbio-ruby1.8 (0.6.2-2)
bioruby tools for computational molecular biology
libghemical-data (1.90-1)
Molecular Modelling Library (Data Files)
libgpib-bin (3.2.04-3 [hppa], 3.2.04-4 [alpha,amd64,arm,i386,ia64,m68k,mips,mipsel,powerpc,s390,sparc])
libgpib support applications and configuration
libpostgis-java (1.0.0-1)
geographic objects support for PostgreSQL. JDBC
loki (2.4.7.4-1)
[Biology] MCMC linkage analysis on general pedigrees
loki-doc (2.4.7.4-1)
[Biology] Postscript manual for loki
mayavi (1.4-1)
A scientific data visualization system
minc-tools (1.4-1)
MNI medical image format tools
mipe (1.1-1)
[Biology] Tools to store PCR-derived data
mn-fit (5.06-1.0.1 [hppa], 5.06-1 [arm,i386,mips,mipsel,powerpc,s390,sparc])
interactive analysis package for fitting data and histograms
mn-fit-common (5.06-1)
common files for Mn_Fit
molphy (2.3b3-1 [alpha,amd64,hppa,ia64,m68k,mips,powerpc,s390], 2.3b3-2 [arm,i386,sparc]) [non-free]
[Biology] Program Package for MOLecular PHYlogenetics
montecarlo-base (2005.05.09-3)
[Physics] Common files for Cernlib Monte Carlo libraries
mozilla-firefox-biofox (1.0.1-1)
bioinformatics tools as an extension to Firefox browser
mpb (1.4.2-7 [alpha,amd64,i386,ia64,m68k,mips,mipsel,powerpc,s390,sparc], 1.4.2-7.0.1 [hppa])
MIT Photonic-Bands
mpb-mpi (1.4.2-7 [alpha,amd64,i386,ia64,m68k,mips,mipsel,powerpc,s390,sparc], 1.4.2-7.0.1 [hppa])
MIT Photonic-Bands, parallel (mpich) version
mpqc (2.2.2-3 [hurd-i386], 2.2.3-1 [m68k], 2.2.3-2 [alpha,amd64,arm,hppa,i386,ia64,mips,mipsel,powerpc,s390,sparc])
The Massively Parallel Quantum Chemistry Program
mpqc-support (2.2.2-3 [hurd-i386], 2.2.3-1 [m68k], 2.2.3-2 [alpha,amd64,arm,hppa,i386,ia64,mips,mipsel,powerpc,s390,sparc])
Support programs and tools for MPQC
mssstest (2.0-2) [non-free]
Normalisation of disease scores for patients with Multiple Sclerosis
muscle (3.52-2)
[Biology] multiple alignment program of protein sequences
muscle-doc (3.52-2)
[Biology] documentation to sequence alignment program
ncbi-epcr (1.2.0-3)
[Biology] Tool to test a DNA sequence for the presence of sequence tagged sites
ncbi-epcr-data (1.2.0-3)
[Biology] NCBI public STS data
ncbi-tools-bin (6.1.20050605-2 [alpha,amd64,arm,hppa,i386,ia64,mips,mipsel,powerpc,s390,sparc], 6.1.20050429-1 [m68k])
NCBI libraries for biology applications (text-based utilities)
ncbi-tools-x11 (6.1.20050605-2 [alpha,amd64,arm,hppa,i386,ia64,mips,mipsel,powerpc,s390,sparc], 6.1.20050429-1 [m68k])
NCBI libraries for biology applications (X-based utilities)
netcdf-bin (3.5.0-7.1)
Support programs for NetCDF.
netcdfg3 (3.5.0-7.1)
An interface for scientific data access.
njplot (0.20041129-2)
[Biology] A tree drawing program
openbabel (1.100.2-3 [alpha,amd64,arm,hppa,i386,ia64,m68k,mips,mipsel,powerpc,s390,sparc], 1.100.2-2 [hurd-i386])
Convert and manipulate chemical data files
openuniverse (1.0beta3.1-2)
3D Universe Simulator
openuniverse-common (1.0beta3.1-2)
3D Universe Simulator data files
paje.app (1.3.2-4)
generic visualization tool (Gantt chart and more)
paw (2005.05.09-1 [sparc], 2005.05.09-2 [hppa], 2004.11.04-3 [m68k], 2005.05.09-3 [alpha,amd64,arm,i386,ia64,mips,mipsel,powerpc,s390])
Physics Analysis Workstation - a graphical analysis program
paw++ (2005.05.09-1 [sparc], 2005.05.09-2 [hppa], 2004.11.04-3 [m68k], 2005.05.09-3 [alpha,amd64,arm,i386,ia64,mips,mipsel,powerpc,s390])
Physics Analysis Workstation (Lesstif-enhanced version)
paw++-static (2005.05.09-1 [sparc], 2005.05.09-2 [hppa], 2004.11.04-3 [m68k], 2005.05.09-3 [alpha,amd64,arm,i386,ia64,mips,mipsel,powerpc,s390])
Physics Analysis Workstation (Lesstif-enhanced version)
paw-common (2005.05.09-3)
Physics Analysis Workstation (common files)
paw-demos (2005.05.09-3)
Physics Analysis Workstation examples and tests
paw-static (2005.05.09-1 [sparc], 2005.05.09-2 [hppa], 2004.11.04-3 [m68k], 2005.05.09-3 [alpha,amd64,arm,i386,ia64,mips,mipsel,powerpc,s390])
Physics Analysis Workstation - a graphical analysis program
perlprimer (1.1.8-1)
[Biology] graphical design of primers for PCR
php4-gpib (3.2.04-3 [hppa], 3.2.04-4 [alpha,amd64,arm,i386,ia64,m68k,mips,mipsel,powerpc,s390,sparc])
libgpib php bindings
phylip (1:3.6.1-2) [non-free]
[Biology] A package of programs for inferring phylogenies
phylip-doc (1:3.6.1-2) [non-free]
[Biology] A package of programs for inferring phylogenies
planets (0.1.12-4)
Gravitation simulation of planetary bodies
polyxmass (0.8.8)
Mass spectrometry software framework
polyxmass-bin (0.8.8-1)
Mass spectrometry framework - GUI program
polyxmass-common (0.8.6-1)
Mass spectrometry framework - essential polymer chemistry data
polyxmass-data (0.8.5-1)
Mass spectrometry framework - supplementary chemical data
praat (4.3.14-1)
program for speech analysis and synthesis
proj (4.4.9-1)
Cartographic projection filter and library
pymol (0.97-2 [m68k], 0.98-1 [alpha,amd64,arm,hppa,i386,ia64,mips,mipsel,powerpc,s390,sparc])
An OpenGL Molecular Graphics System written in Python
qgis (0.6.0-2)
Geographic Information System (GIS)
qgis-dev (0.6.0-2)
QGIS Geographic Information System - development files
qmc (0.94-3)
Quine McClusky Simplification Tool
qtdmm (0.8.4-1)
GUI for digital multimeter
rasmol (2.7.2.1.1-3)
Visualize biological macromolecules
rasmol-doc (2.7.2.1.1-3)
Documentation for rasmol
raster3d (2.7c-5) [non-free]
tools for generating images of proteins or other molecules
raster3d-doc (2.7c-5) [non-free]
documents and example files for Raster3D
readseq (1-6)
[Biology] Conversion between sequence formats
saods9 (3.0.3-1)
image display tool for astronomy
seaview (20021127-4) [contrib]
[Biology] A multiple sequence alignment editor
seesat5 (0.90.10-1)
a satellite location program
sim4 (0.0.20030921-1)
tool for aligning cDNA and genomic DNA
spass (2.1-3)
An automated theorem prover for first-order logic with equality
ssystem (1.6-15)
3D solar system simulator
starplot (0.95.2-2)
3-dimensional perspective star map viewer
stars (0.12+1-1) [contrib]
star map program that draws the night sky
stellarium (0.6.2-2)
real-time photo-realistic sky generator
stellarium-data (0.6.2-2)
datafiles for Stellarium, a real-time photo-realistic sky generator
survex (1.0.34)
cave surveying and mapping software
survex-aven (1.0.34)
sophisticated cave survey viewer for Survex
survex-svxedit (1.0.34)
survey data editor for Survex
t-coffee (2.50-1)
[Biology] Multiple Sequence Alignment
tessa (0.3.1-2)
simulation of 3D optical systems with the FDTD method
tessa-mpi (0.3.1-2)
simulation of 3D optical systems using FDTD on LAM-MPI clusters
textopo (1.3-2)
[Biology] LaTeX presentation of topology of transmembrane proteins
therion (0.3.6-1)
Cave surveying - 2D and 3D drawing software
tigr-glimmer (2.13-1)
[Biology] Gene detection in archea and bacteria
tochnog (20010124-2.1)
A free implicit/explicit finite element analysis program
transcalc (0.13-1.1)
microwave and RF transmission line calculator
tree-puzzle (5.2-1)
[Biology] Reconstruction of phylogenetic trees by maximum likelihood
treetool (2.0.2a-2 [m68k], 2.0.2a-3 [alpha,arm,hppa,i386,mips,mipsel,powerpc,s390,sparc]) [non-free]
[Biology] An interactive tool for displaying trees
units-filter (1.0-3)
Parser for expressions concerning physical values
viewmol (2.4.1-6)
A graphical front end for computational chemistry programs.
xbs (0-7.2)
3-d models and movies of molecules
xdrawchem (1.9.4-3)
an open-source version of ChemDraw
xmakemol (5.14-1)
A program for visualizing atomic and molecular systems
xmakemol-gl (5.14-1)
A program for visualizing atomic and molecular systems
xplot (1.19-6)
a simple x-y column data plotter for X.
xtide (2.6.4-1)
provides tide and current predictions
xtide-data (20040203-1)
Harmonics data for xtide
yale (1.0-11) [non-free]
Stellar data set from the Third Catalogue of Nearby Stars
ygraph (0.15-1)
Visualize one-dimensional scientific data |
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